Transcript: ENST00000546999.1 HAL-005

Description

histidine ammonia-lyase [Source:HGNC Symbol;Acc:4806]

Gene Synonyms

HIS, HSTD

Location

Chromosome 12: 96,367,858-96,390,003 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 5 domains and features, is associated with 9589 variant alleles and maps to 672 oligo probes.

Gene

This transcript is a product of gene ENSG00000084110.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261208.3	HAL-001	3913	657aa	ENSP00000261208.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9058	P42357 Q2PH56 Q2PH60 Q2PH61	NM_002108.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541929.1	HAL-201	2804	449aa	ENSP00000446364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58264	P42357 Q2PH56	NM_001258333.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538703.1	HAL-002	2637	591aa	ENSP00000440861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58265	P42357 Q2PH56 Q2PH60 Q2PH61	NM_001258334.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552509.1	HAL-006	1026	336aa	ENSP00000450372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VNX0 Q2PH56 Q2PH60	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548808.1	HAL-009	753	154aa	ENSP00000446678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546579.1	HAL-010	697	157aa	ENSP00000447543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0V1 Q2PH60 Q2PH61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544080.2	HAL-003	2804	167aa	ENSP00000439385.2	Nonsense mediated decay		Q4VB95	-	-
ENST00000546999.1	HAL-005	2271	167aa	ENSP00000447675.1	Nonsense mediated decay		Q4VB95	-	-
ENST00000551562.1	HAL-008	450	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548636.1	HAL-011	370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549376.1	HAL-007	352	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 6, Transcript length: 2,271 bps, Translation length: 167 residues

Version

ENST00000546999.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408648 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000546999.1 HAL-005

Summary