Transcript: ENST00000325366.9 C5orf22-001

Description

chromosome 5 open reading frame 22 [Source:HGNC Symbol;Acc:25639]

Gene Synonyms

FLJ11193

Location

Chromosome 5: 31,532,373-31,555,165 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 9365 variant alleles and maps to 509 oligo probes.

Gene

This transcript is a product of gene ENSG00000082213.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325366.9	C5orf22-001	3612	442aa	ENSP00000326879.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3895	Q49AR2	NM_018356.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355907.3	C5orf22-201	3799	163aa	ENSP00000348171.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q49AR2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507818.2	C5orf22-006	568	156aa	ENSP00000430860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHP8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510659.1	C5orf22-002	3117	136aa	ENSP00000423039.1	Nonsense mediated decay		B4DR92	-	-
ENST00000513967.1	C5orf22-003	978	136aa	ENSP00000421667.1	Nonsense mediated decay		B4DR92	-	-
ENST00000504464.1	C5orf22-009	914	136aa	ENSP00000430261.1	Nonsense mediated decay		B4DR92	-	-
ENST00000511208.2	C5orf22-005	583	49aa	ENSP00000428898.1	Nonsense mediated decay		E5RFG1	-	-
ENST00000504866.1	C5orf22-004	2447	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517780.1	C5orf22-010	810	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510530.1	C5orf22-008	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515409.1	C5orf22-007	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,612 bps, Translation length: 442 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q49AR2

CCDS

This transcript is a member of the Human CCDS set: CCDS3895

Version

ENST00000325366.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253726 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000325366.9 C5orf22-001

Summary