Transcript: ENST00000355585.4 SYNJ2-002

Description

synaptojanin 2 [Source:HGNC Symbol;Acc:11504]

Gene Synonyms

INPP5H, KIAA0348

Location

Chromosome 6: 158,402,919-158,520,208 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 21 domains and features, is associated with 53166 variant alleles and maps to 1018 oligo probes.

Gene

This transcript is a product of gene ENSG00000078269.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355585.4	SYNJ2-002	7378	1496aa	ENSP00000347792.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5254	B4DLC4 O15056	NM_003898.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367122.2	SYNJ2-202	7271	1451aa	ENSP00000356089.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ER60	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367112.1	SYNJ2-003	5091	581aa	ENSP00000356079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367121.3	SYNJ2-201	3973	1288aa	ENSP00000356088.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15056	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449859.2	SYNJ2-203	2060	516aa	ENSP00000388371.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJU8 Q5TA15	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449320.1	SYNJ2-005	547	92aa	ENSP00000411202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TA15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000367113.4	SYNJ2-004	499	136aa	ENSP00000356080.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000485863.1	SYNJ2-001	810	165aa	ENSP00000436657.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 7,378 bps, Translation length: 1,496 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15056

CCDS

This transcript is a member of the Human CCDS set: CCDS5254

Version

ENST00000355585.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000042858 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000355585.4 SYNJ2-002

Summary