Transcript: ENST00000485071.1 LRCH4-004

Description

leucine-rich repeats and calponin homology (CH) domain containing 4 [Source:HGNC Symbol;Acc:6691]

Gene Synonyms

LRN, LRRN1, LRRN4, PP14183

Location

Chromosome 7: 100,169,855-100,176,323 reverse strand.

About this transcript

This transcript has 16 exons, is associated with 4377 variant alleles and maps to 1134 oligo probes.

Gene

This transcript is a product of gene ENSG00000077454.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310300.6	LRCH4-001	2552	683aa	ENSP00000309689.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34706	C9JYK0 O75427	NM_002319.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497245.1	LRCH4-002	2014	231aa	ENSP00000419870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYK0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485554.1	LRCH4-012	774	177aa	ENSP00000419674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000467201.1	LRCH4-003	4754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485071.1	LRCH4-004	4401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476881.1	LRCH4-005	1675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498539.1	LRCH4-010	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487697.1	LRCH4-009	756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470184.1	LRCH4-008	659	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485583.1	LRCH4-007	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490359.1	LRCH4-011	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 0, Transcript length: 4,401 bps,

Version

ENST00000485071.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000356113 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000485071.1 LRCH4-004

Summary