Transcript: ENST00000347545.4 ARHGEF1-001

Description

Rho guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:681]

Gene Synonyms

GEF1, LBCL2, LSC, P115-RHOGEF, SUB1.5

Location

Chromosome 19: 42,387,292-42,411,606 forward strand.

About this transcript

This transcript has 28 exons, is annotated with 23 domains and features, is associated with 12741 variant alleles and maps to 688 oligo probes.

Gene

This transcript is a product of gene ENSG00000076928.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000599846.1	ARHGEF1-010	3393	968aa	ENSP00000470715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354532.3	ARHGEF1-005	3243	912aa	ENSP00000346532.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12591	Q92888	NM_004706.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337665.4	ARHGEF1-006	3171	927aa	ENSP00000337261.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12590	Q92888	NM_199002.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347545.4	ARHGEF1-001	3091	879aa	ENSP00000344429.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12592	Q92888	NM_198977.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378152.4	ARHGEF1-007	2986	948aa	ENSP00000367394.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NX52	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599589.1	ARHGEF1-009	2636	702aa	ENSP00000469735.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000594258.1	ARHGEF1-017	919	307aa	ENSP00000470042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000595723.1	ARHGEF1-022	872	291aa	ENSP00000472466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000594521.1	ARHGEF1-015	826	275aa	ENSP00000470557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZH8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000594417.1	ARHGEF1-024	769	128aa	ENSP00000471942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598812.1	ARHGEF1-014	588	88aa	ENSP00000473229.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000600517.1	ARHGEF1-019	428	68aa	ENSP00000469409.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000596957.1	ARHGEF1-013	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000594513.1	ARHGEF1-026	325	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600274.1	ARHGEF1-002	3439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595897.1	ARHGEF1-011	2973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600387.1	ARHGEF1-012	2272	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594044.1	ARHGEF1-018	834	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593869.1	ARHGEF1-016	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595770.1	ARHGEF1-025	663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593609.1	ARHGEF1-023	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598444.1	ARHGEF1-021	425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598587.1	ARHGEF1-020	359	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 26, Transcript length: 3,091 bps, Translation length: 879 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92888

CCDS

This transcript is a member of the Human CCDS set: CCDS12592

Version

ENST00000347545.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000463063 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000347545.4 ARHGEF1-001

Summary