Transcript: ENST00000556085.1 PAX2-006

Description

paired box 2 [Source:HGNC Symbol;Acc:8616]

Gene Synonyms

PAPRS

Location

Chromosome 10: 102,505,977-102,587,406 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 34453 variant alleles and maps to 298 oligo probes.

Gene

This transcript is a product of gene ENSG00000075891.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370296.2	PAX2-201	4209	419aa	ENSP00000359319.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02962 Q5SZP1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428433.1	PAX2-202	4126	417aa	ENSP00000396259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53569	Q02962 Q5SZP1	NM_003990.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355243.3	PAX2-001	4056	394aa	ENSP00000347385.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41561	Q02962	NM_003989.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361791.3	PAX2-002	3516	396aa	ENSP00000355069.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7499	Q02962	NM_003988.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554172.1	PAX2-005	1748	303aa	ENSP00000452489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5S4 Q6YFJ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556085.1	PAX2-006	1253	393aa	ENSP00000452527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5U4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427256.1	PAX2-003	677	214aa	ENSP00000398652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZP1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554363.1	PAX2-007	582	35aa	ENSP00000452429.1	Nonsense mediated decay		G3V5M8	-	-
ENST00000553492.1	PAX2-008	507	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483202.2	PAX2-004	1216	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,253 bps, Translation length: 393 residues

Version

ENST00000556085.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411529 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000556085.1 PAX2-006

Summary