Transcript: ENST00000525428.1 CLNS1A-001

Description

chloride channel, nucleotide-sensitive, 1A [Source:HGNC Symbol;Acc:2080]

Gene Synonyms

CLCI, CLNS1B, ICLN, ICln

Location

Chromosome 11: 77,325,575-77,348,850 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 10233 variant alleles and maps to 436 oligo probes.

Gene

This transcript is a product of gene ENSG00000074201.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000525428.1	CLNS1A-001	2993	237aa	ENSP00000433919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8252	P54105 Q9P1H0	NM_001293.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263309.3	CLNS1A-002	1172	203aa	ENSP00000263309.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KN38 Q9P1H0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525064.1	CLNS1A-007	1121	179aa	ENSP00000433741.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJF4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528364.1	CLNS1A-006	953	237aa	ENSP00000434311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8252	P54105 Q9P1H0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532069.1	CLNS1A-003	898	167aa	ENSP00000434963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526009.1	CLNS1A-010	747	23aa	ENSP00000436245.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000527133.2	CLNS1A-004	667	49aa	ENSP00000432570.1	Nonsense mediated decay		E9PQ83	-	-
ENST00000526761.1	CLNS1A-005	415	22aa	ENSP00000475218.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533957.1	CLNS1A-012	369	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527265.1	CLNS1A-008	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527299.1	CLNS1A-009	387	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525359.1	CLNS1A-011	283	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,993 bps, Translation length: 237 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P54105

CCDS

This transcript is a member of the Human CCDS set: CCDS8252

Version

ENST00000525428.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000382156 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000525428.1 CLNS1A-001

Summary