Transcript: ENST00000478349.2 SMARCE1-018

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109]

Gene Synonyms

BAF57

Location

Chromosome 17: 38,787,079-38,804,080 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 7018 variant alleles and maps to 329 oligo probes.

Gene

This transcript is a product of gene ENSG00000073584.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000348513.6	SMARCE1-001	5840	411aa	ENSP00000323967.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11370	B4DGM3 C0IMW8 J3KT85 J3QKX6 J3QR61 Q969G3	NM_003079.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474246.1	SMARCE1-006	2124	77aa	ENSP00000463405.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL66	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544009.1	SMARCE1-201	1644	341aa	ENSP00000441857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT85 Q969G3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431889.2	SMARCE1-012	1569	393aa	ENSP00000445370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DGM3 C0IMW8 J3KT85 J3QR61	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377808.4	SMARCE1-008	1307	328aa	ENSP00000367039.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C048 J3KT85 Q969G3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400122.3	SMARCE1-015	1263	293aa	ENSP00000411607.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C048 J3KT85 Q969G3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580419.1	SMARCE1-013	1228	376aa	ENSP00000462475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT85 Q969G3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578044.1	SMARCE1-014	1184	341aa	ENSP00000464511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT85 Q969G3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478349.2	SMARCE1-018	1090	288aa	ENSP00000463216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C0IMW8 J3KT85 J3QKS7 J3QR61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000264640.4	SMARCE1-009	631	177aa	ENSP00000466608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C048	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582955.1	SMARCE1-019	621	129aa	ENSP00000463282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580654.1	SMARCE1-016	554	153aa	ENSP00000464061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C0IMW8 J3KT85 J3QR61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447024.1	SMARCE1-010	536	157aa	ENSP00000392958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C048	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577721.1	SMARCE1-017	449	101aa	ENSP00000462857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT85	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578112.1	SMARCE1-011	2384	52aa	ENSP00000464501.1	Nonsense mediated decay		J3QS32	-	-
ENST00000481231.1	SMARCE1-007	695	55aa	ENSP00000462381.1	Nonsense mediated decay		J3KS99	-	-
ENST00000493660.1	SMARCE1-004	2284	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469334.1	SMARCE1-003	2128	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578995.1	SMARCE1-020	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583294.1	SMARCE1-021	476	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 8, Transcript length: 1,090 bps, Translation length: 288 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000478349.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447533 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000478349.2 SMARCE1-018

Summary