Transcript: ENST00000339570.5 SCARB1-001

Description

scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:1664]

Gene Synonyms

CD36L1, CLA-1, CLA1, HDLQTL6, SR-BI, SRB1

Location

Chromosome 12: 125,261,402-125,348,463 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 17 domains and features, is associated with 38614 variant alleles and maps to 577 oligo probes.

Gene

This transcript is a product of gene ENSG00000073060.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339570.5	SCARB1-001	3329	506aa	ENSP00000343795.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45008	F8W8N0	NM_001082959.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415380.2	SCARB1-006	2731	552aa	ENSP00000414979.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WTV0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261693.6	SCARB1-004	2611	509aa	ENSP00000261693.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9259	Q8WTV0	NM_005505.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541205.1	SCARB1-203	2347	512aa	ENSP00000446107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KW46 F5H4X0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376788.1	SCARB1-201	2304	409aa	ENSP00000365984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WTV0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540495.1	SCARB1-202	1883	516aa	ENSP00000443286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZ71 F5H4X0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544327.1	SCARB1-009	1812	499aa	ENSP00000444851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4X0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546215.1	SCARB1-007	1597	481aa	ENSP00000442862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZKQ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545493.1	SCARB1-012	581	146aa	ENSP00000443454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5E8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535005.1	SCARB1-003	1845	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545305.1	SCARB1-010	851	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000539320.2	SCARB1-011	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541661.1	SCARB1-013	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000538291.1	SCARB1-005	5527	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,329 bps, Translation length: 506 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS45008

Version

ENST00000339570.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000400164 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000339570.5 SCARB1-001

Summary