Transcript: ENST00000336735.4 SEL1L-001

Description

sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]

Gene Synonyms

IBD2, PRO1063, SEL1-LIKE, SEL1L1, TSA305

Location

About this transcript

This transcript has 21 exons, is annotated with 48 domains and features, is associated with 26171 variant alleles and maps to 907 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336735.4	SEL1L-001	7925	794aa	ENSP00000337053.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9876	Q9UBV2	NM_005065.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555824.1	SEL1L-003	1631	301aa	ENSP00000450709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58333	Q9UBV2	NM_001244984.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557372.1	SEL1L-004	594	163aa	ENSP00000451144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3B3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554293.1	SEL1L-006	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555923.1	SEL1L-005	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554744.1	SEL1L-007	602	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 7,925 bps, Translation length: 794 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UBV2

CCDS

This transcript is a member of the Human CCDS set: CCDS9876

Version

ENST00000336735.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000413325 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.