Transcript: ENST00000428135.3 SNX13-001

Description

sorting nexin 13 [Source:HGNC Symbol;Acc:21335]

Gene Synonyms

KIAA0713, RGS-PX1

Location

Chromosome 7: 17,830,385-17,980,117 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 24 domains and features, is associated with 70386 variant alleles and maps to 999 oligo probes.

Gene

This transcript is a product of gene ENSG00000071189.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409389.1	SNX13-002	6816	888aa	ENSP00000386705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428135.3	SNX13-001	6357	957aa	ENSP00000398789.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47551	B3KN60 Q9Y5W8	NM_015132.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409604.1	SNX13-003	4146	189aa	ENSP00000386639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NSH0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409076.2	SNX13-008	3818	154aa	ENSP00000387053.2	Nonsense mediated decay		F8W8A9	-	-
ENST00000444712.1	SNX13-006	2018	43aa	ENSP00000397768.1	Nonsense mediated decay		F8WB11	-	-
ENST00000496855.1	SNX13-007	1499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498463.1	SNX13-011	687	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474067.1	SNX13-009	603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475800.1	SNX13-013	507	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471744.1	SNX13-010	454	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494402.1	SNX13-012	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492626.1	SNX13-004	3956	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482558.1	SNX13-005	1139	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 6,357 bps, Translation length: 957 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5W8

CCDS

This transcript is a member of the Human CCDS set: CCDS47551

Version

ENST00000428135.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000327607 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000428135.3 SNX13-001

Summary