Transcript: ENST00000397909.2 NAV3-001

Description

neuron navigator 3 [Source:HGNC Symbol;Acc:15998]

Gene Synonyms

KIAA0938, POMFIL1, STEERIN3, unc53H3

Location

Chromosome 12: 78,225,069-78,606,787 forward strand.

About this transcript

This transcript has 40 exons, is annotated with 42 domains and features, is associated with 180834 variant alleles and maps to 970 oligo probes.

Gene

This transcript is a product of gene ENSG00000067798.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397909.2	NAV3-001	9821	2385aa	ENSP00000381007.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66432	F8VZV4 Q8IVL0	NM_001024383.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000228327.6	NAV3-201	9758	2363aa	ENSP00000228327.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUC6 F8VZV4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266692.7	NAV3-202	9227	2186aa	ENSP00000266692.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUA9 F8VZV4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536525.2	NAV3-003	7386	2363aa	ENSP00000446132.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41815	F8VZV4 Q8IVL0	NM_014903.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552895.1	NAV3-004	6266	1258aa	ENSP00000446644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549464.1	NAV3-002	2595	679aa	ENSP00000446628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VZV4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550788.1	NAV3-005	2398	799aa	ENSP00000448303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YI14	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000551162.1	NAV3-006	1226	253aa	ENSP00000448243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DH94	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000541270.1	NAV3-203	1226	215aa	ENSP00000444918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DH94	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550503.1	NAV3-010	698	233aa	ENSP00000448037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000552300.1	NAV3-012	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549369.1	NAV3-007	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547725.1	NAV3-009	468	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550673.1	NAV3-014	325	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551277.1	NAV3-008	297	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548948.1	NAV3-011	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547884.1	NAV3-013	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 40, Coding exons: 40, Transcript length: 9,821 bps, Translation length: 2,385 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IVL0

CCDS

This transcript is a member of the Human CCDS set: CCDS66432

Version

ENST00000397909.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000406812 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000397909.2 NAV3-001

Summary