Transcript: ENST00000416114.1 NGEF-004

Description

neuronal guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:7807]

Gene Synonyms

ARHGEF27, EPHEXIN

Location

Chromosome 2: 233,750,033-233,766,172 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 9596 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000066248.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264051.3	NGEF-001	3215	710aa	ENSP00000264051.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2500	B4DDI2 C9JTV7 Q8N5V2	NM_019850.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373552.4	NGEF-003	2286	618aa	ENSP00000362653.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46544	B4DDI2 C9JTV7 Q8N5V2	NM_001114090.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539537.1	NGEF-201	1494	433aa	ENSP00000439035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDI2 C9JTV7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409079.1	NGEF-002	1022	238aa	ENSP00000387033.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N5V2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416114.1	NGEF-004	667	187aa	ENSP00000401063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTV7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000424488.1	NGEF-008	569	190aa	ENSP00000387591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000458735.1	NGEF-005	528	150aa	ENSP00000412614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2D9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420650.1	NGEF-006	519	173aa	ENSP00000407544.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000414326.1	NGEF-010	460	97aa	ENSP00000405053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489127.1	NGEF-009	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461944.1	NGEF-007	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 667 bps, Translation length: 187 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000416114.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000330264 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000416114.1 NGEF-004

Summary