Transcript: ENST00000536413.2 MAP2K4-005

Description

mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:6844]

Gene Synonyms

JNKK, JNKK1, MAPKK4, MEK4, MKK4, PRKMK4, SAPKK-1, SAPKK1, SEK1, SERK1, SKK1

Location

Chromosome 17: 12,027,616-12,047,047 forward strand.

About this transcript

This transcript has 4 exons, is associated with 8630 variant alleles and maps to 496 oligo probes.

Gene

This transcript is a product of gene ENSG00000065559.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000415385.3	MAP2K4-002	3856	410aa	ENSP00000410402.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62095	J3KTI6 J3QQR2 P45985	NM_001281435.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353533.5	MAP2K4-001	3826	399aa	ENSP00000262445.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11162	J3KTI6 J3QQR2 P45985	NM_003010.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602811.1	MAP2K4-011	1136	41aa	ENSP00000473582.1	Nonsense mediated decay		R4GN68	-	-
ENST00000602375.1	MAP2K4-012	1064	92aa	ENSP00000473472.1	Nonsense mediated decay		R4GN37	-	-
ENST00000602686.1	MAP2K4-014	977	41aa	ENSP00000473458.1	Nonsense mediated decay		R4GN68	-	-
ENST00000602305.1	MAP2K4-013	961	45aa	ENSP00000473606.1	Nonsense mediated decay		J3QLE2	-	-
ENST00000602537.1	MAP2K4-015	948	41aa	ENSP00000473511.1	Nonsense mediated decay		R4GN68	-	-
ENST00000538465.3	MAP2K4-008	925	16aa	ENSP00000467239.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582183.1	MAP2K4-010	551	45aa	ENSP00000463507.1	Nonsense mediated decay		J3QLE2	-	-
ENST00000581941.1	MAP2K4-003	813	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579089.1	MAP2K4-009	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582897.1	MAP2K4-006	482	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536413.2	MAP2K4-005	3852	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582377.1	MAP2K4-004	648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585076.1	MAP2K4-007	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 3,852 bps,

Version

ENST00000536413.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441231 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000536413.2 MAP2K4-005

Summary