Transcript: ENST00000587275.1 U2AF2-009

Description

U2 small nuclear RNA auxiliary factor 2 [Source:HGNC Symbol;Acc:23156]

Gene Synonyms

U2AF65

Location

Chromosome 19: 56,173,885-56,175,425 forward strand.

About this transcript

This transcript has 2 exons, is associated with 879 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene ENSG00000063244.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308924.4	U2AF2-002	1698	475aa	ENSP00000307863.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12933	P26368	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450554.2	U2AF2-001	3022	471aa	ENSP00000388475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46197	K7ENG2 P26368	NM_007279.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590551.1	U2AF2-008	1104	307aa	ENSP00000466935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592874.1	U2AF2-007	849	86aa	ENSP00000466167.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587196.2	U2AF2-003	778	51aa	ENSP00000470020.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588850.1	U2AF2-010	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587275.1	U2AF2-009	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592867.1	U2AF2-005	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 554 bps,

Version

ENST00000587275.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000453606 (version 1)

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Transcript: ENST00000587275.1 U2AF2-009

Summary