Transcript: ENST00000550704.1 EIF4B-013

Description

eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285]

Gene Synonyms

EIF-4B, PRO1843

Location

Chromosome 12: 53,400,243-53,431,218 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 10 domains and features, is associated with 15581 variant alleles and maps to 404 oligo probes.

Gene

This transcript is a product of gene ENSG00000063046.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262056.9	EIF4B-001	4148	611aa	ENSP00000262056.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41788	P23588	NM_001417.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416762.3	EIF4B-005	1985	572aa	ENSP00000412530.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DS13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420463.3	EIF4B-007	1936	616aa	ENSP00000388806.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EX17	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549481.1	EIF4B-015	1097	360aa	ENSP00000449746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VX11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552490.1	EIF4B-016	841	275aa	ENSP00000450324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VP89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551002.1	EIF4B-014	537	169aa	ENSP00000447192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0K0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550704.1	EIF4B-013	1476	227aa	ENSP00000448365.1	Nonsense mediated decay		F8VSC7	-	-
ENST00000549077.1	EIF4B-010	885	175aa	ENSP00000448399.1	Nonsense mediated decay		F8VRU1	-	-
ENST00000550390.1	EIF4B-012	871	185aa	ENSP00000448980.1	Nonsense mediated decay		F8VYE9	-	-
ENST00000551527.1	EIF4B-009	769	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549645.1	EIF4B-017	590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549592.1	EIF4B-008	1901	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550025.1	EIF4B-011	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553209.1	EIF4B-018	380	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 7, Transcript length: 1,476 bps, Translation length: 227 residues

Version

ENST00000550704.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000405307 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000550704.1 EIF4B-013

Summary