Transcript: ENST00000427332.2 HDAC7-013

Description

histone deacetylase 7 [Source:HGNC Symbol;Acc:14067]

Gene Synonyms

DKFZP586J0917, HD7A, HDAC7A

Location

Chromosome 12: 48,177,624-48,214,395 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 18 domains and features, is associated with 17139 variant alleles and maps to 701 oligo probes.

Gene

This transcript is a product of gene ENSG00000061273.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000080059.7	HDAC7-001	4095	991aa	ENSP00000080059.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8756	C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JZ79 F8VWY3 Q8WUI4	NM_015401.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354334.3	HDAC7-002	4065	954aa	ENSP00000351326.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41776	C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JZ79 F8VWY3 Q8WUI4	NM_001098416.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380610.4	HDAC7-029	3261	1014aa	ENSP00000369984.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JZ79 F8VWY3 J3KPH8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552960.1	HDAC7-028	3216	974aa	ENSP00000448532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JVZ1 C9JZ79 F8VWY3 Q8WUI4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427332.2	HDAC7-013	3016	952aa	ENSP00000404394.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JZ79 F8VWY3 Q8WUI4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548080.1	HDAC7-031	1479	384aa	ENSP00000446538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000430670.1	HDAC7-019	914	274aa	ENSP00000396159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBC2 C9JEB6 C9JF80 C9JGF5 C9JH46 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434070.1	HDAC7-014	645	153aa	ENSP00000388561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J102 C9JBC2 C9JGF5 C9JH46 C9JS90 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422254.1	HDAC7-021	593	141aa	ENSP00000410068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBC2 C9JF80 C9JGF5 C9JH46 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000421231.1	HDAC7-016	583	138aa	ENSP00000412155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J102 C9JBC2 C9JGF5 C9JH46 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440293.1	HDAC7-020	580	159aa	ENSP00000411058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAH2 C9JBC2 C9JGF5 C9JH46 C9JVZ1 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450805.1	HDAC7-010	579	112aa	ENSP00000397236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBC2 C9JGF5 C9JH46 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417902.1	HDAC7-018	576	133aa	ENSP00000400811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGF5 C9JH46 C9JVZ1 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417107.1	HDAC7-009	569	78aa	ENSP00000387792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH46 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447463.1	HDAC7-012	558	154aa	ENSP00000389501.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000433685.1	HDAC7-011	402	88aa	ENSP00000403149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGF5 C9JH46 C9JZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445237.2	HDAC7-015	364	51aa	ENSP00000390415.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH46	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477203.2	HDAC7-030	3122	224aa	ENSP00000449171.1	Nonsense mediated decay		C9J102 C9JBC2 C9JGF5 C9JH46 C9JNI4 C9JS90 C9JZ79 F8VWY3	-	-
ENST00000548938.1	HDAC7-003	2719	61aa	ENSP00000448305.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000485796.1	HDAC7-022	724	152aa	ENSP00000448448.1	Nonsense mediated decay		H0YI41	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000425451.2	HDAC7-017	621	101aa	ENSP00000401872.2	Nonsense mediated decay		C9JKN3	-	-
ENST00000547259.1	HDAC7-004	569	110aa	ENSP00000447191.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488927.1	HDAC7-027	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549883.1	HDAC7-033	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477937.2	HDAC7-026	410	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459625.1	HDAC7-007	6414	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470668.1	HDAC7-005	4266	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471235.1	HDAC7-008	1012	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463732.1	HDAC7-023	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491464.1	HDAC7-024	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 24, Transcript length: 3,016 bps, Translation length: 952 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WUI4

Version

ENST00000427332.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328804 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000427332.2 HDAC7-013

Summary