Transcript: ENST00000369091.2 PRDM1-004

Description

PR domain containing 1, with ZNF domain [Source:HGNC Symbol;Acc:9346]

Gene Synonyms

BLIMP1, PRDI-BF1

Location

Chromosome 6: 106,534,195-106,555,383 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 37 domains and features, is associated with 10839 variant alleles and maps to 352 oligo probes.

Gene

This transcript is a product of gene ENSG00000057657.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369096.4	PRDM1-001	5164	825aa	ENSP00000358092.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5054	B2REA5 O75626 Q5T4E8	NM_001198.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369089.3	PRDM1-002	4675	691aa	ENSP00000358085.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34505	B4DW27 O75626	NM_182907.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369091.2	PRDM1-004	2612	789aa	ENSP00000358087.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REA5 O75626 Q5T4E8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424894.1	PRDM1-006	583	63aa	ENSP00000395566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450060.1	PRDM1-007	583	171aa	ENSP00000399772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REA4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489365.1	PRDM1-005	649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481163.1	PRDM1-003	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,612 bps, Translation length: 789 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75626

Version

ENST00000369091.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000327265 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000369091.2 PRDM1-004

Summary