Transcript: ENST00000488403.1 NOP58-002

Description

NOP58 ribonucleoprotein [Source:HGNC Symbol;Acc:29926]

Gene Synonyms

HSPC120, NOL5, NOP5, NOP5/NOP58

Location

Chromosome 2: 203,130,459-203,149,435 forward strand.

About this transcript

This transcript has 5 exons, is associated with 9227 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSG00000055044.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264279.5	NOP58-001	2046	529aa	ENSP00000264279.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2353	Q9Y2X3	NM_015934.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433543.2	NOP58-008	714	187aa	ENSP00000388126.1	Nonsense mediated decay		H7BZ72	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000426814.1	NOP58-006	655	68aa	ENSP00000388905.1	Nonsense mediated decay		F8WED0	-	-
ENST00000467734.1	NOP58-007	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478508.1	NOP58-010	599	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472050.1	NOP58-003	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492688.1	NOP58-005	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488403.1	NOP58-002	871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492740.1	NOP58-009	793	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478941.1	NOP58-004	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 871 bps,

Version

ENST00000488403.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336294 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000488403.1 NOP58-002

Summary