Transcript: ENST00000372755.3 VCL-001

Description

vinculin [Source:HGNC Symbol;Acc:12665]

Gene Synonyms

CMD1W, CMH15, HEL114, MV, MVCL

Location

Chromosome 10: 75,757,872-75,879,918 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 33 domains and features, is associated with 47540 variant alleles and maps to 800 oligo probes.

Gene

This transcript is a product of gene ENSG00000035403.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000211998.4	VCL-201	5482	1134aa	ENSP00000211998.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7341	P18206 Q5JQ13	NM_014000.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372755.3	VCL-001	5286	1066aa	ENSP00000361841.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7340	P18206	NM_003373.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436396.1	VCL-002	4412	806aa	ENSP00000415489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JQ13	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417648.2	VCL-202	1386	327aa	ENSP00000411887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTM7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478896.2	VCL-003	727	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472585.1	VCL-004	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461383.1	VCL-005	268	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 5,286 bps, Translation length: 1,066 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18206

CCDS

This transcript is a member of the Human CCDS set: CCDS7340

Version

ENST00000372755.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000048751 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000372755.3 VCL-001

Summary