Transcript: ENST00000340157.4 VRK2-001

Description

vaccinia related kinase 2 [Source:HGNC Symbol;Acc:12719]

Location

Chromosome 2: 58,273,826-58,387,006 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 11 domains and features, is associated with 55391 variant alleles and maps to 604 oligo probes.

Gene

This transcript is a product of gene ENSG00000028116.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435505.2	VRK2-005	2446	508aa	ENSP00000408002.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1859	Q86Y07	NM_001288837.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417641.2	VRK2-004	2381	396aa	ENSP00000402375.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46291	Q86Y07	NM_001288838.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412104.2	VRK2-201	2036	396aa	ENSP00000404156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46291	Q86Y07	NM_001130483.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340157.4	VRK2-001	1888	508aa	ENSP00000342381.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1859	Q86Y07	NM_006296.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440705.2	VRK2-008	1676	485aa	ENSP00000398323.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46292	Q86Y07	NM_001130482.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428021.1	VRK2-003	553	82aa	ENSP00000404961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERS5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000432057.1	VRK2-002	1870	59aa	ENSP00000400006.1	Nonsense mediated decay		E9PBU1	-	-
ENST00000478687.1	VRK2-006	1021	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463222.1	VRK2-007	492	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,888 bps, Translation length: 508 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86Y07

CCDS

This transcript is a member of the Human CCDS set: CCDS1859

Version

ENST00000340157.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251496 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000340157.4 VRK2-001

Summary