Transcript: ENST00000469543.1 VIM-003

Description

vimentin [Source:HGNC Symbol;Acc:12692]

Gene Synonyms

CTRCT30, HEL113

Location

Chromosome 10: 17,272,003-17,279,592 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 3799 variant alleles and maps to 529 oligo probes.

Gene

This transcript is a product of gene ENSG00000026025.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000544301.1	VIM-201	2128	466aa	ENSP00000446007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7120	P08670	NM_003380.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000224237.5	VIM-001	1868	466aa	ENSP00000224237.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7120	P08670	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421459.2	VIM-008	753	173aa	ENSP00000391842.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JVS8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469543.1	VIM-003	2666	228aa	ENSP00000431702.1	Nonsense mediated decay		B0YJC5	-	-
ENST00000487938.1	VIM-002	2272	431aa	ENSP00000435613.1	Nonsense mediated decay		B0YJC4	-	-
ENST00000485947.1	VIM-007	1139	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495528.1	VIM-009	962	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478317.1	VIM-004	941	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478746.1	VIM-005	757	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497849.1	VIM-006	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,666 bps, Translation length: 228 residues

Version

ENST00000469543.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000047017 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000469543.1 VIM-003

Summary