Transcript: ENST00000405853.3 NR1H3-006

Description

nuclear receptor subfamily 1, group H, member 3 [Source:HGNC Symbol;Acc:7966]

Gene Synonyms

LXR-a, LXRA, RLD-1

Location

Chromosome 11: 47,279,549-47,290,394 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 28 domains and features, is associated with 4845 variant alleles and maps to 496 oligo probes.

Gene

This transcript is a product of gene ENSG00000025434.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000467728.1	NR1H3-001	2731	447aa	ENSP00000420656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7929	C9J2C8 C9J4R0 C9JBS2 C9JCS0 C9JEC2 C9JJ16 C9JTS4 F1D8N1 Q13133	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481889.2	NR1H3-023	1704	466aa	ENSP00000433271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C8 E9PLL4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441012.2	NR1H3-030	1637	447aa	ENSP00000387946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7929	C9J2C8 C9J4R0 C9JBS2 C9JCS0 C9JEC2 C9JJ16 C9JTS4 F1D8N1 Q13133	NM_005693.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395397.3	NR1H3-031	1501	402aa	ENSP00000378793.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44585	C9J2C8 Q13133	NM_001130102.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405853.3	NR1H3-006	1480	387aa	ENSP00000384745.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44584	B5MBY7 C9J2C8 C9J4R0 C9JBS2 C9JCS0 C9JEC2 C9JJ16 C9JTS4 E9PID2 Q13133	NM_001130101.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405576.1	NR1H3-003	1352	342aa	ENSP00000385073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MBY7 C9J2C8 E9PID2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407404.1	NR1H3-002	1330	387aa	ENSP00000385801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44584	B5MBY7 C9J2C8 C9J4R0 C9JBS2 C9JCS0 C9JEC2 C9JJ16 C9JTS4 E9PID2 Q13133	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527949.1	NR1H3-032	1065	296aa	ENSP00000432073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PID2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436029.1	NR1H3-016	911	212aa	ENSP00000403696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C8 C9J4R0 C9JBS2 C9JCS0 C9JEC2 C9JJ16 C9JTS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449369.1	NR1H3-013	825	205aa	ENSP00000415591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C8 C9J4R0 C9JCS0 C9JEC2 C9JJ16 C9JTS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000436778.1	NR1H3-007	802	202aa	ENSP00000403798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C8 C9J4R0 C9JEC2 C9JJ16 C9JTS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444396.1	NR1H3-010	784	193aa	ENSP00000391005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C8 C9J4R0 C9JEC2 C9JTS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531660.1	NR1H3-037	667	167aa	ENSP00000434650.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPA1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412937.1	NR1H3-012	574	134aa	ENSP00000412636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457932.1	NR1H3-011	552	77aa	ENSP00000413095.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEC2 C9JTS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437276.1	NR1H3-017	440	68aa	ENSP00000396132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEC2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420369.1	NR1H3-019	780	114aa	ENSP00000406692.1	Nonsense mediated decay		F8WC63	-	-
ENST00000419652.1	NR1H3-014	555	54aa	ENSP00000407716.1	Nonsense mediated decay		F8WEY6	-	-
ENST00000529540.1	NR1H3-029	1673	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527464.1	NR1H3-028	1183	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461778.1	NR1H3-015	726	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525441.1	NR1H3-039	610	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476086.2	NR1H3-038	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495866.1	NR1H3-026	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532630.1	NR1H3-036	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473222.1	NR1H3-022	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530310.1	NR1H3-035	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481020.1	NR1H3-005	1704	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487913.1	NR1H3-008	852	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462051.1	NR1H3-024	706	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483882.1	NR1H3-021	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498548.1	NR1H3-018	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486991.1	NR1H3-009	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494018.1	NR1H3-025	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,480 bps, Translation length: 387 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13133

CCDS

This transcript is a member of the Human CCDS set: CCDS44584

Version

ENST00000405853.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319219 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000405853.3 NR1H3-006

Summary