Transcript: ENST00000582150.1 UTP18-006

Description

UTP18 small subunit (SSU) processome component homolog (yeast) [Source:HGNC Symbol;Acc:24274]

Gene Synonyms

CGI-48, WDR50

Location

Chromosome 17: 49,373,616-49,375,290 forward strand.

About this transcript

This transcript has 2 exons, is associated with 688 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000011260.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225298.7	UTP18-001	1894	556aa	ENSP00000225298.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42362	Q9Y5J1	NM_016001.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583725.1	UTP18-005	577	177aa	ENSP00000462614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSR7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579261.2	UTP18-008	567	123aa	ENSP00000464194.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582832.1	UTP18-009	464	115aa	ENSP00000463499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLD6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583205.1	UTP18-007	664	143aa	ENSP00000464095.1	Nonsense mediated decay		J3QR85	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000508506.3	UTP18-004	592	43aa	ENSP00000441335.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582150.1	UTP18-006	897	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 897 bps,

Version

ENST00000582150.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000368671 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000582150.1 UTP18-006

Summary