Transcript: ENST00000005558.4 IFRD1-001

Description

interferon-related developmental regulator 1 [Source:HGNC Symbol;Acc:5456]

Gene Synonyms

PC4, TIS7

Location

Chromosome 7: 112,063,199-112,115,582 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 8 domains and features, is associated with 21869 variant alleles and maps to 511 oligo probes.

Gene

This transcript is a product of gene ENSG00000006652.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000403825.3	IFRD1-002	2290	451aa	ENSP00000384477.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34736	A4D0U1 B7Z4L0 C9J311 C9J7U6 C9JFH1 C9JLG5 C9JNM6 E9PMY4 O00458 Q75M98 Q75M99 Q75MS4	NM_001550.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429071.1	IFRD1-003	1938	148aa	ENSP00000397314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J311 C9J7U6 C9JA65 C9JLG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000005558.4	IFRD1-001	1834	451aa	ENSP00000005558.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34736	A4D0U1 B7Z4L0 C9J311 C9J7U6 C9JFH1 C9JLG5 C9JNM6 E9PMY4 O00458 Q75M98 Q75M99 Q75MS4	NM_001197080.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535603.1	IFRD1-201	1597	401aa	ENSP00000439188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56504	B7Z4L0 C9J7U6 C9JFH1 C9JNM6 E9PMY4 O00458 Q75MS4	NM_001197079.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421296.1	IFRD1-011	1034	90aa	ENSP00000403203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JFH1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440625.1	IFRD1-009	891	127aa	ENSP00000402177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7U6 C9JNM6 E9PMY4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000432734.1	IFRD1-014	574	30aa	ENSP00000391379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J311	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445335.1	IFRD1-006	570	62aa	ENSP00000402453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J311 C9JLG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476927.1	IFRD1-008	486	103aa	ENSP00000437250.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7U6 E9PMY4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443101.2	IFRD1-005	440	40aa	ENSP00000397592.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7U6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462155.2	IFRD1-013	437	98aa	ENSP00000435635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YEE3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417662.1	IFRD1-007	429	17aa	ENSP00000413893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486688.1	IFRD1-010	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466459.1	IFRD1-016	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489994.1	IFRD1-004	1721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470441.1	IFRD1-012	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,834 bps, Translation length: 451 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00458

CCDS

This transcript is a member of the Human CCDS set: CCDS34736

Version

ENST00000005558.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000338480 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000005558.4 IFRD1-001

Summary