Transcript: ENST00000580174.1 COPZ2-002

Description

coatomer protein complex, subunit zeta 2 [Source:HGNC Symbol;Acc:19356]

Gene Synonyms

MGC23008

Location

Chromosome 17: 46,111,258-46,115,392 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1877 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSG00000005243.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000006101.4	COPZ2-201	886	208aa	ENSP00000006101.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3QQQ5 Q9P299	NM_016429.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579263.1	COPZ2-006	746	79aa	ENSP00000463841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3QQQ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581756.1	COPZ2-003	686	141aa	ENSP00000462035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580174.1	COPZ2-002	157	9aa	ENSP00000463581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584955.1	COPZ2-009	713	116aa	ENSP00000464484.1	Nonsense mediated decay	J3QS21	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581637.1	COPZ2-005	590	56aa	ENSP00000463687.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583414.1	COPZ2-010	520	45aa	ENSP00000463413.1	Nonsense mediated decay	J3QL73	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584666.1	COPZ2-001	891	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000582553.1	COPZ2-004	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000580409.1	COPZ2-008	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000585182.1	COPZ2-007	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 157 bps, Translation length: 9 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000580174.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442957 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000580174.1 COPZ2-002

Summary