Transcript: ENST00000502843.1 CD38-002

Description

CD38 molecule [Source:HGNC Symbol;Acc:1667]

Gene Synonyms

T10

Location

Chromosome 4: 15,779,898-15,850,878 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 30585 variant alleles and maps to 447 oligo probes.

Gene

This transcript is a product of gene ENSG00000004468.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000226279.3	CD38-001	5668	300aa	ENSP00000226279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3417	B4DMR7 P28907 Q4FCX6	NM_001775.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510674.1	CD38-005	455	151aa	ENSP00000423047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y950	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000502843.1	CD38-002	1560	122aa	ENSP00000427277.1	Nonsense mediated decay		P28907 Q4FCX6	-	-
ENST00000511430.1	CD38-003	1672	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506191.1	CD38-004	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 1,560 bps, Translation length: 122 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28907

Version

ENST00000502843.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs1800051, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-MKK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000359588 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000502843.1 CD38-002

Summary