Transcript: ENST00000535568.1 PGA5-004

Description

pepsinogen 5, group I (pepsinogen A) [Source:HGNC Symbol;Acc:8887]

Gene Synonyms

PGA3, PGA4

Location

Chromosome 11: 61,009,318-61,012,991 forward strand.

About this transcript

This transcript has 3 exons, is associated with 34 variant alleles and maps to 330 oligo probes.

Gene

This transcript is a product of gene ENSG00000256713.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000312403.5	PGA5-001	1519	388aa	ENSP00000309542.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8001	F5GWT0 P0DJD9	NM_014224.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451616.2	PGA5-006	971	234aa	ENSP00000408739.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JM59 F5GWT0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541528.1	PGA5-005	867	128aa	ENSP00000441981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWT0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545109.1	PGA5-002	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000536269.1	PGA5-003	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535568.1	PGA5-004	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 572 bps,

Version

ENST00000535568.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397975 (version 1)

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Transcript: ENST00000535568.1 PGA5-004

Summary