Transcript: ENST00000519052.1 SFTA3-004

Description

surfactant associated 3 [Source:HGNC Symbol;Acc:18387]

Gene Synonyms

SFTPH

Location

Chromosome 14: 36,942,493-36,947,171 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2206 variant alleles and maps to 360 oligo probes.

Gene

This transcript is a product of gene ENSG00000229415.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000518529.2	SFTA3-001	1531	94aa	ENSP00000428331.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45097	P0C7M3	NM_001101341.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521114.1	SFTA3-002	1191	76aa	ENSP00000427853.1	Nonsense mediated decay		E5RG42	-	-
ENST00000518446.1	SFTA3-005	791	76aa	ENSP00000429830.1	Nonsense mediated decay		E5RG42	-	-
ENST00000518002.1	SFTA3-009	770	95aa	ENSP00000428247.1	Nonsense mediated decay		G5EA12	-	-
ENST00000524122.1	SFTA3-008	694	76aa	ENSP00000428198.1	Nonsense mediated decay		E5RG42	-	-
ENST00000518987.1	SFTA3-006	682	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521380.1	SFTA3-010	316	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519052.1	SFTA3-004	1796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000418548.3	SFTA3-007	870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,796 bps,

Version

ENST00000519052.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000376216 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000519052.1 SFTA3-004

Summary