Transcript: ENST00000482399.1 VPS52-007

Description

vacuolar protein sorting 52 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:10518]

Gene Synonyms

ARE1, RP5-1033B10, SAC2, SACM2L, dJ1033B10.5

Location

Chromosome 6: 33,218,049-33,239,653 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 2 domains and features, is associated with 9359 variant alleles and maps to 3017 oligo probes.

Gene

This transcript is a product of gene ENSG00000223501.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000445902.2	VPS52-001	2960	723aa	ENSP00000409952.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4770	B4DNI9 B4DS44 Q8N1B4	NM_022553.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482399.1	VPS52-007	3338	88aa	ENSP00000436612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PI03	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436044.2	VPS52-201	2355	598aa	ENSP00000395282.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DNI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478934.1	VPS52-002	2602	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464425.1	VPS52-004	1060	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463486.1	VPS52-005	925	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493674.1	VPS52-011	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495981.1	VPS52-010	743	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471309.1	VPS52-006	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493379.1	VPS52-003	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461743.1	VPS52-009	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495755.1	VPS52-008	453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 1, Transcript length: 3,338 bps, Translation length: 88 residues

Version

ENST00000482399.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000156312 (version 6)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000482399.1 VPS52-007

Summary