Transcript: ENST00000378539.5 PLXNA4-002

Description

plexin A4 [Source:HGNC Symbol;Acc:9102]

Gene Synonyms

DKFZp434G0625PRO34003, FAYV2820, KIAA1550, PLEXA4, PLXNA4A, PLXNA4B, PRO34003

Location

Chromosome 7: 132,169,517-132,333,447 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 76888 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSG00000221866.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359827.3	PLXNA4-001	13786	1894aa	ENSP00000352882.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43646	Q9HCM2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000321063.4	PLXNA4-201	13061	1894aa	ENSP00000323194.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43646	Q9HCM2	NM_020911.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423507.2	PLXNA4-004	3314	492aa	ENSP00000392772.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43647	Q9HCM2	NM_001105543.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378539.5	PLXNA4-002	2004	522aa	ENSP00000367800.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5826	A4D1N6	NM_181775.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496550.1	PLXNA4-005	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 2,004 bps, Translation length: 522 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS5826

Version

ENST00000378539.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000338495 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000378539.5 PLXNA4-002

Summary