Transcript: ENST00000264005.5 LCAT-001

Description

lecithin-cholesterol acyltransferase [Source:HGNC Symbol;Acc:6522]

Location

Chromosome 16: 67,973,653-67,978,034 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 2411 variant alleles and maps to 369 oligo probes.

Gene

This transcript is a product of gene ENSG00000213398.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264005.5	LCAT-001	1507	440aa	ENSP00000264005.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10854	J3QSE5 P04180	NM_000229.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570980.1	LCAT-004	1240	255aa	ENSP00000464651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QSE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576450.1	LCAT-011	359	80aa	ENSP00000458141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570369.1	LCAT-008	348	107aa	ENSP00000459014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570396.1	LCAT-012	322	61aa	ENSP00000459291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L215	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573538.1	LCAT-007	1083	138aa	ENSP00000463220.1	Nonsense mediated decay		J3QKT0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000575467.1	LCAT-003	842	93aa	ENSP00000460653.1	Nonsense mediated decay		I3L3R0	-	-
ENST00000575277.1	LCAT-005	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573846.1	LCAT-006	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,507 bps, Translation length: 440 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04180

CCDS

This transcript is a member of the Human CCDS set: CCDS10854

Version

ENST00000264005.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268885 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000264005.5 LCAT-001

Summary