Transcript: ENST00000374680.3 RXRB-001

Description

retinoid X receptor, beta [Source:HGNC Symbol;Acc:10478]

Gene Synonyms

DAUDI6, H-2RIIBP, NR2B2, RCoR-1

Location

Chromosome 6: 33,161,365-33,168,465 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 31 domains and features, is associated with 3280 variant alleles and maps to 1850 oligo probes.

Gene

This transcript is a product of gene ENSG00000204231.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374685.4	RXRB-002	2846	537aa	ENSP00000363817.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59007	E9PK75 P28702	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374680.3	RXRB-001	2908	533aa	ENSP00000363812.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4768	E9PK75 P28702 Q5STP9	NM_021976.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413614.2	RXRB-201	1324	286aa	ENSP00000415561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z3E4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544186.1	RXRB-202	1227	347aa	ENSP00000439222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483281.1	RXRB-004	1977	79aa	ENSP00000431369.1	Nonsense mediated decay		E9PK75	-	-
ENST00000481441.1	RXRB-003	1330	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483821.1	RXRB-006	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,908 bps, Translation length: 533 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28702

CCDS

This transcript is a member of the Human CCDS set: CCDS4768

Version

ENST00000374680.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076642 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000374680.3 RXRB-001

Summary