Transcript: ENST00000361781.2 SGMS1-003

Description

sphingomyelin synthase 1 [Source:HGNC Symbol;Acc:29799]

Gene Synonyms

MGC17342, MOB, MOB1, SMS1, TMEM23, hmob33

Location

Chromosome 10: 52,065,360-52,383,743 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 125541 variant alleles and maps to 570 oligo probes.

Gene

This transcript is a product of gene ENSG00000198964.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361781.2	SGMS1-003	3744	413aa	ENSP00000354829.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7240	D3DWC4 E6ZCI7 R4GNI5	NM_147156.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602565.2	SGMS1-002	1333	12aa	ENSP00000475427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000361543.2	SGMS1-201	1013	241aa	ENSP00000355235.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C0MHM2 Q86VZ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429490.1	SGMS1-202	735	244aa	ENSP00000406795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJU2 R4GNI5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602619.1	SGMS1-005	461	35aa	ENSP00000473668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GNI5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492601.2	SGMS1-004	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000609445.1	SGMS1-007	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000608287.1	SGMS1-006	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498514.1	SGMS1-001	397	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 5, Transcript length: 3,744 bps, Translation length: 413 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS7240

Version

ENST00000361781.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000048074 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000361781.2 SGMS1-003

Summary