Transcript: ENST00000579439.1 ARHGEF15-004

Description

Rho guanine nucleotide exchange factor (GEF) 15 [Source:HGNC Symbol;Acc:15590]

Gene Synonyms

ARGEF15, E5, Ephexin5, FLJ13791, KIAA0915, MGC44868, Vsm-RhoGEF

Location

Chromosome 17: 8,214,140-8,216,261 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 1207 variant alleles and maps to 228 oligo probes.

Gene

This transcript is a product of gene ENSG00000198844.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361926.3	ARHGEF15-001	4154	841aa	ENSP00000355026.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11139	J3KT46 J3QS60 O94989	NM_173728.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421050.1	ARHGEF15-201	4094	841aa	ENSP00000412505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11139	J3KT46 J3QS60 O94989	NM_025014.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579439.1	ARHGEF15-004	714	207aa	ENSP00000464540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT46 J3QS60	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583529.1	ARHGEF15-005	537	116aa	ENSP00000462796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT46	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581809.1	ARHGEF15-006	668	91aa	ENSP00000463875.1	Nonsense mediated decay		J3QQS4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582060.1	ARHGEF15-008	248	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000455564.3	ARHGEF15-002	2105	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578286.1	ARHGEF15-007	469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 714 bps, Translation length: 207 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000579439.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442310 (version 1)

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Transcript: ENST00000579439.1 ARHGEF15-004

Summary