Transcript: ENST00000367521.1 COLGALT2-003

Description

collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:16790]

Gene Synonyms

C1orf17, GLT25D2, KIAA0584

Location

Chromosome 1: 183,904,971-183,915,752 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 4604 variant alleles and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSG00000198756.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361927.4	COLGALT2-001	5177	626aa	ENSP00000354960.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1360	B3KT92 Q5SXQ5 Q8IYK4	NM_015101.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367521.1	COLGALT2-003	4723	234aa	ENSP00000356491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SXQ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546159.1	COLGALT2-201	2352	554aa	ENSP00000439112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3T5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367520.3	COLGALT2-002	2325	363aa	ENSP00000356490.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SXQ3 Q5SXQ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486375.1	COLGALT2-004	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,723 bps, Translation length: 234 residues

Version

ENST00000367521.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000086130 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000367521.1 COLGALT2-003

Summary