Transcript: ENST00000475057.1 SUPT3H-001

Description

suppressor of Ty 3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11466]

Gene Synonyms

SPT3, SPT3L

Location

Chromosome 6: 44,777,054-45,345,690 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 9 domains and features, is associated with 249774 variant alleles and maps to 523 oligo probes.

Gene

This transcript is a product of gene ENSG00000196284.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371460.1	SUPT3H-005	2389	328aa	ENSP00000360515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34466	B4E1H0 O75486	NM_181356.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371459.1	SUPT3H-006	2091	317aa	ENSP00000360514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34465	B4E1H0 O75486 Q5U608	NM_003599.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371461.2	SUPT3H-202	987	328aa	ENSP00000360516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34466	B4E1H0 O75486	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306867.5	SUPT3H-201	954	317aa	ENSP00000306718.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34465	B4E1H0 O75486 Q5U608	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371458.1	SUPT3H-004	728	108aa	ENSP00000360513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VWT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475057.1	SUPT3H-001	1377	317aa	ENSP00000436411.1	Nonsense mediated decay	CCDS34465	B4E1H0 O75486 Q5U608	-	-
ENST00000459689.1	SUPT3H-003	396	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 1,377 bps, Translation length: 317 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75486

CCDS

This transcript is a member of the Human CCDS set: CCDS34465

Version

ENST00000475057.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040749 (version 4)

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Transcript: ENST00000475057.1 SUPT3H-001

Summary