Transcript: ENST00000475057.1 SUPT3H-001

Description

suppressor of Ty 3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11466]

Gene Synonyms

SPT3, SPT3L

Location

Chromosome 6: 44,777,054-45,345,690 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 9 domains and features, is associated with 249774 variant alleles and maps to 523 oligo probes.

Gene

This transcript is a product of gene ENSG00000196284.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371460.1	SUPT3H-005	2389	328aa	ENSP00000360515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34466	B4E1H0 O75486	NM_181356.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371459.1	SUPT3H-006	2091	317aa	ENSP00000360514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34465	B4E1H0 O75486 Q5U608	NM_003599.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371461.2	SUPT3H-202	987	328aa	ENSP00000360516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34466	B4E1H0 O75486	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306867.5	SUPT3H-201	954	317aa	ENSP00000306718.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34465	B4E1H0 O75486 Q5U608	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371458.1	SUPT3H-004	728	108aa	ENSP00000360513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VWT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475057.1	SUPT3H-001	1377	317aa	ENSP00000436411.1	Nonsense mediated decay	CCDS34465	B4E1H0 O75486 Q5U608	-	-
ENST00000459689.1	SUPT3H-003	396	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 1,377 bps, Translation length: 317 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75486

CCDS

This transcript is a member of the Human CCDS set: CCDS34465

Version

ENST00000475057.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040749 (version 4)

Favourite species

All species

Recent locations

Transcript: ENST00000475057.1 SUPT3H-001

Summary