Transcript: ENST00000398908.3 HMGB1-005

Description

high mobility group box 1 [Source:HGNC Symbol;Acc:4983]

Gene Synonyms

DKFZp686A04236, HMG1, HMG3, SBP-1

Location

Chromosome 13: 31,037,348-31,040,651 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 2641 variant alleles and maps to 377 oligo probes.

Gene

This transcript is a product of gene ENSG00000189403.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000405805.1	HMGB1-012	4199	215aa	ENSP00000384678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341423.5	HMGB1-004	2339	215aa	ENSP00000345347.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	NM_002128.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339872.4	HMGB1-001	2319	215aa	ENSP00000343040.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399489.1	HMGB1-009	1727	158aa	ENSP00000382412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7C0 Q5T7C4 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399494.1	HMGB1-011	1282	215aa	ENSP00000382417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326004.4	HMGB1-003	821	158aa	ENSP00000369904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7C0 Q5T7C4 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398908.3	HMGB1-005	454	97aa	ENSP00000410465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7C0 Q9NYD7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468384.1	HMGB1-007	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490788.1	HMGB1-008	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 454 bps, Translation length: 97 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000398908.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044360 (version 2)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000398908.3 HMGB1-005

Summary