Transcript: ENST00000341423.5 HMGB1-004

Description

high mobility group box 1 [Source:HGNC Symbol;Acc:4983]

Gene Synonyms

DKFZp686A04236, HMG1, HMG3, SBP-1

Location

Chromosome 13: 31,033,987-31,040,102 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 4288 variant alleles and maps to 976 oligo probes.

Gene

This transcript is a product of gene ENSG00000189403.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000405805.1	HMGB1-012	4199	215aa	ENSP00000384678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341423.5	HMGB1-004	2339	215aa	ENSP00000345347.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	NM_002128.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339872.4	HMGB1-001	2319	215aa	ENSP00000343040.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399489.1	HMGB1-009	1727	158aa	ENSP00000382412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7C0 Q5T7C4 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399494.1	HMGB1-011	1282	215aa	ENSP00000382417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9335	P09429 Q5T7C0 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326004.4	HMGB1-003	821	158aa	ENSP00000369904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7C0 Q5T7C4 Q9NYD7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398908.3	HMGB1-005	454	97aa	ENSP00000410465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7C0 Q9NYD7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468384.1	HMGB1-007	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490788.1	HMGB1-008	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,339 bps, Translation length: 215 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09429

CCDS

This transcript is a member of the Human CCDS set: CCDS9335

Version

ENST00000341423.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000044359 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000341423.5 HMGB1-004

Summary