Transcript: ENST00000492347.1 AGAP4-002

Description

ArfGAP with GTPase domain, ankyrin repeat and PH domain 4 [Source:HGNC Symbol;Acc:23459]

Gene Synonyms

AGAP-4, CTGLF1, Em:AC012044.1, MRIP2

Location

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 9197 variant alleles and maps to 1241 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000448048.2	AGAP4-001	2439	663aa	ENSP00000392513.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7215	Q96P64	NM_133446.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492347.1	AGAP4-002	413	137aa	ENSP00000468160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER91	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000430779.2	AGAP4-003	952	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490752.1	AGAP4-005	400	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495243.1	AGAP4-004	340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 413 bps, Translation length: 137 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000492347.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000047800 (version 2)