Transcript: ENST00000448048.2 AGAP4-001

Description

ArfGAP with GTPase domain, ankyrin repeat and PH domain 4 [Source:HGNC Symbol;Acc:23459]

Gene Synonyms

AGAP-4, CTGLF1, Em:AC012044.1, MRIP2

Location

About this transcript

This transcript has 7 exons, is annotated with 27 domains and features, is associated with 12898 variant alleles and maps to 2528 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000448048.2	AGAP4-001	2439	663aa	ENSP00000392513.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7215	Q96P64	NM_133446.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492347.1	AGAP4-002	413	137aa	ENSP00000468160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER91	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000430779.2	AGAP4-003	952	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490752.1	AGAP4-005	400	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495243.1	AGAP4-004	340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,439 bps, Translation length: 663 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96P64

CCDS

This transcript is a member of the Human CCDS set: CCDS7215

Version

ENST00000448048.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000047799 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.