Transcript: ENST00000489901.1 SESTD1-008

Description

SEC14 and spectrin domains 1 [Source:HGNC Symbol;Acc:18379]

Gene Synonyms

DKFZp434O0515, SOLO, Solo

Location

Chromosome 2: 179,996,772-180,011,186 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 6131 variant alleles and maps to 94 oligo probes.

Gene

This transcript is a product of gene ENSG00000187231.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000428443.3	SESTD1-001	10615	696aa	ENSP00000415332.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33338	C9J4X8 C9JHW6 Q7Z6D3 Q86VW0	NM_178123.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435047.1	SESTD1-005	681	143aa	ENSP00000410286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4X8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440010.1	SESTD1-004	619	146aa	ENSP00000416164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4X8 C9JHW6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446758.1	SESTD1-003	1699	210aa	ENSP00000410632.1	Nonsense mediated decay		Q9UFF8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000335289.5	SESTD1-002	1675	106aa	ENSP00000334183.5	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000426988.1	SESTD1-009	724	225aa	ENSP00000391000.1	Nonsense mediated decay		H7BZR8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000452991.1	SESTD1-006	460	93aa	ENSP00000387517.1	Nonsense mediated decay		F8WFB2	-	-
ENST00000486468.1	SESTD1-007	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489901.1	SESTD1-008	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 652 bps,

Version

ENST00000489901.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000335923 (version 1)

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Transcript: ENST00000489901.1 SESTD1-008

Summary