Transcript: ENST00000476292.1 SMYD4-004

Description

SET and MYND domain containing 4 [Source:HGNC Symbol;Acc:21067]

Gene Synonyms

KIAA1936, ZMYND21

Location

Chromosome 17: 1,686,404-1,687,157 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 417 variant alleles and maps to 84 oligo probes.

Gene

This transcript is a product of gene ENSG00000186532.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305513.7	SMYD4-001	4384	804aa	ENSP00000304360.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11013	I3L2P4 I3L428 I3L496 Q8IYR2	NM_052928.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491788.1	SMYD4-002	3016	558aa	ENSP00000460921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L428	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570368.1	SMYD4-005	793	223aa	ENSP00000459819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2P4 I3L496	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571854.1	SMYD4-003	586	177aa	ENSP00000461089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L496	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576633.1	SMYD4-006	515	72aa	ENSP00000459129.1	Nonsense mediated decay		I3L1V4	-	-
ENST00000573937.1	SMYD4-007	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476292.1	SMYD4-004	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 553 bps,

Version

ENST00000476292.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318359 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000476292.1 SMYD4-004

Summary