Transcript: ENST00000305513.7 SMYD4-001

Description

SET and MYND domain containing 4 [Source:HGNC Symbol;Acc:21067]

Gene Synonyms

KIAA1936, ZMYND21

Location

Chromosome 17: 1,682,779-1,733,175 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 26077 variant alleles and maps to 484 oligo probes.

Gene

This transcript is a product of gene ENSG00000186532.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305513.7	SMYD4-001	4384	804aa	ENSP00000304360.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11013	I3L2P4 I3L428 I3L496 Q8IYR2	NM_052928.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491788.1	SMYD4-002	3016	558aa	ENSP00000460921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L428	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570368.1	SMYD4-005	793	223aa	ENSP00000459819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2P4 I3L496	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571854.1	SMYD4-003	586	177aa	ENSP00000461089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L496	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576633.1	SMYD4-006	515	72aa	ENSP00000459129.1	Nonsense mediated decay		I3L1V4	-	-
ENST00000573937.1	SMYD4-007	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476292.1	SMYD4-004	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 4,384 bps, Translation length: 804 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IYR2

CCDS

This transcript is a member of the Human CCDS set: CCDS11013

Version

ENST00000305513.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000207108 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000305513.7 SMYD4-001

Summary