Transcript: ENST00000558533.1 TARSL2-004

Description

threonyl-tRNA synthetase-like 2 [Source:HGNC Symbol;Acc:24728]

Gene Synonyms

FLJ25005

Location

About this transcript

This transcript has 14 exons, is annotated with 9 domains and features, is associated with 24019 variant alleles and maps to 438 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335968.3	TARSL2-001	3610	802aa	ENSP00000338093.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10394	A2RTX5	NM_152334.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539112.1	TARSL2-003	2774	766aa	ENSP00000439899.1	Nonsense mediated decay		B7ZLP8	-	-
ENST00000558533.1	TARSL2-004	1916	148aa	ENSP00000452740.1	Nonsense mediated decay		H0YKB9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559492.1	TARSL2-005	755	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557811.1	TARSL2-006	360	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560150.1	TARSL2-007	335	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 6, Transcript length: 1,916 bps, Translation length: 148 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000558533.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417026 (version 3)