Transcript: ENST00000532366.1 CNTN2-004

Description

contactin 2 (axonal) [Source:HGNC Symbol;Acc:2172]

Gene Synonyms

AXT, FAME5, TAG-1, TAG1, TAX, TAX1

Location

Chromosome 1: 205,026,866-205,027,542 forward strand.

About this transcript

This transcript has 2 exons, is associated with 364 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSG00000184144.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331830.4	CNTN2-001	8141	1040aa	ENSP00000330633.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1449	Q02246	NM_005076.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481872.2	CNTN2-002	4306	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530117.1	CNTN2-003	1238	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525433.1	CNTN2-007	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532366.1	CNTN2-004	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527340.1	CNTN2-005	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530594.1	CNTN2-006	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 562 bps,

Version

ENST00000532366.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000386318 (version 1)

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Transcript: ENST00000532366.1 CNTN2-004

Summary