Transcript: ENST00000359525.2 LIN9-004

Description

lin-9 homolog (C. elegans) [Source:HGNC Symbol;Acc:30830]

Gene Synonyms

BARA, BARPsv, Lin-9, TGS, TGS1, TGS2

Location

Chromosome 1: 226,475,394-226,496,772 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 9267 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSG00000183814.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328205.5	LIN9-001	3567	558aa	ENSP00000329102.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1553	B1B047 Q5TKA1	NM_173083.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366801.1	LIN9-201	3219	507aa	ENSP00000355766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TKA1	NM_001270409.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366808.1	LIN9-002	3186	613aa	ENSP00000355773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1B047 H0Y322	NM_001270410.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460719.1	LIN9-003	2909	518aa	ENSP00000418121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4T7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481685.1	LIN9-005	1916	489aa	ENSP00000418489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5J4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359525.2	LIN9-004	686	71aa	ENSP00000352515.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1B047	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 686 bps, Translation length: 71 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000359525.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000099048 (version 1)

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Transcript: ENST00000359525.2 LIN9-004

Summary