Transcript: ENST00000556765.1 TRAPPC6B-005

Description

trafficking protein particle complex 6B [Source:HGNC Symbol;Acc:23066]

Gene Synonyms

TPC6

Location

Chromosome 14: 39,621,015-39,639,634 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 8776 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSG00000182400.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000330149.5	TRAPPC6B-002	3242	158aa	ENSP00000330289.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41947	B0AZV9 G3V4C3 Q86SZ2	NM_001079537.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347691.5	TRAPPC6B-001	3229	130aa	ENSP00000335171.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9670	G3V4C3 Q86SZ2	NM_177452.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554018.1	TRAPPC6B-006	541	102aa	ENSP00000450670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2H7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000555269.1	TRAPPC6B-007	1000	50aa	ENSP00000452236.1	Nonsense mediated decay		G3V4C3	-	-
ENST00000556765.1	TRAPPC6B-005	664	50aa	ENSP00000451711.1	Nonsense mediated decay		G3V4C3	-	-
ENST00000557764.1	TRAPPC6B-004	870	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469361.1	TRAPPC6B-003	4533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 664 bps, Translation length: 50 residues

Version

ENST00000556765.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410205 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000556765.1 TRAPPC6B-005

Summary