Transcript: ENST00000592268.1 RAD23A-005

Description

RAD23 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:9812]

Gene Synonyms

HHR23A, HR23A, MGC111083

Location

Chromosome 19: 13,056,706-13,064,405 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 28 domains and features, is associated with 4286 variant alleles and maps to 468 oligo probes.

Gene

This transcript is a product of gene ENSG00000179262.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000586534.1	RAD23A-002	1746	363aa	ENSP00000467024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12289	B4DDJ7 K7ENJ0 P54725	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316856.3	RAD23A-001	1736	362aa	ENSP00000321365.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59358	K7ENJ0 Q59EU8	NM_005053.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592268.1	RAD23A-005	1526	308aa	ENSP00000468674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59357	K7ENJ0 P54725	NM_001270363.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541222.1	RAD23A-201	1350	198aa	ENSP00000438741.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDJ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590881.1	RAD23A-008	999	150aa	ENSP00000467628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQ16	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593114.1	RAD23A-004	1691	139aa	ENSP00000466968.1	Nonsense mediated decay		K7ENJ0	-	-
ENST00000591499.1	RAD23A-003	1350	142aa	ENSP00000466243.1	Nonsense mediated decay		K7ELW1 K7ENJ0	-	-
ENST00000586375.1	RAD23A-010	894	62aa	ENSP00000466226.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588826.2	RAD23A-007	832	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588329.1	RAD23A-006	1034	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591467.1	RAD23A-009	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,526 bps, Translation length: 308 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P54725

CCDS

This transcript is a member of the Human CCDS set: CCDS59357

Version

ENST00000592268.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452753 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000592268.1 RAD23A-005

Summary